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Chiroptera Blumenbach, 1779 (12)
Cistugidae (1)- Emballonuridae Gervais, 1856 (4)
- Hipposideridae Lydekker, 1891 (5)
- Megadermatidae H. Allen, 1864 (2)
- Miniopteridae (1)
- Molossidae Gervais, 1856 (8)
- Myzopodidae Thomas, 1904 (1)
- Nycteridae Van der Hoeven, 1855 (1)
- Pteropodidae Gray, 1821 (14)
- Rhinolophidae Gray, 1825 (1)
- Rhinopomatidae Bonaparte, 1838 (1)
- Vespertilionidae Gray, 1821 (16)
- Barbastella Gray, 1821 (2)
- Eptesicus Rafinesque, 1820 (6)
- Glauconycteris Dobson, 1875 (12)
- Hypsugo Kolenati, 1856 (2)
- Kerivoula Gray, 1842 (8)
- Laephotis Thomas, 1901 (4)
- Mimetillus Thomas, 1904 (1)
- Myotis Kaup, 1829 (13)
Myotis anjouanensis Dorst, 1960- Myotis bocagii (Peters, 1870)
- Myotis capaccinii (Bonaparte, 1837)
- Myotis dieteri Happold, 2005
- Myotis emarginatus (E. Geoffroy, 1806)
- Myotis goudotii (A. Smith, 1834)
- Myotis morrisi Hill, 1971
- Myotis mystacinus (Kuhl, 1817)
- Myotis nattereri (Kuhl, 1817)
- Myotis punicus Felten, Spitzenberger & Storch, 1977
- Myotis scotti Thomas, 1927
- Myotis tricolor (Temminck, 1832)
- Myotis welwitschii (Gray, 1866)
- Neoromicia Roberts, 1926 (11)
- Nyctalus Bowdich, 1825 (3)
- Nycticeinops J. Edwards Hill & Harrison, 1987 (1)
- Otonycteris Peters, 1859 (1)
- Pipistrellus Kaup, 1829 (17)
- Plecotus E. Geoffroy, 1818 (3)
- Scotoecus Thomas, 1901 (3)
- Scotophilus Leach, 1821 (11)